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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtl IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtl IMIStreptavidin / 0.920
2rtm IMIStreptavidin / 0.882
2rte BTNStreptavidin / 0.778
2izg BTNStreptavidin / 0.777
2rtq IMIStreptavidin / 0.776
2izh BTNStreptavidin / 0.775
2y3f BTNStreptavidin / 0.775
2rtg BTNStreptavidin / 0.773
2rtf BTNStreptavidin / 0.772
2rtd BTNStreptavidin / 0.771
2izf BTNStreptavidin / 0.770
2izj BTNStreptavidin / 0.766
2izl IMIStreptavidin / 0.766
3wzn BTNStreptavidin / 0.765
1rxj BNIStreptavidin / 0.762
1nc9 IMIStreptavidin / 0.761
2rtp IMIStreptavidin / 0.751
1n9m BTNStreptavidin / 0.743
2rto IMIStreptavidin / 0.740
1nqm BTNStreptavidin / 0.736
1swg BTNStreptavidin / 0.733
3t2w BTNAvidin/streptavidin / 0.730
1rxh BNIStreptavidin / 0.728
4bx7 B4FStreptavidin / 0.726
1lcw SHMStreptavidin / 0.724
2zsc BTNTamavidin2 / 0.723
1swn BTNStreptavidin / 0.721
1i9h BNIStreptavidin / 0.719
3rdo BTNStreptavidin / 0.719
1swe BTNStreptavidin / 0.717
1n43 BTNStreptavidin / 0.715
2c4i BTNAvidin / 0.715
1swt BTNStreptavidin / 0.710
3wyp BSOStreptavidin / 0.708
1df8 BTNStreptavidin / 0.707
1ndj BTNStreptavidin / 0.706
1mk5 BTNStreptavidin / 0.703
4gda BTNStreptavidin / 0.699
1swr BTNStreptavidin / 0.696
3ry2 BTNStreptavidin / 0.694
1swp BTQStreptavidin / 0.693
3rdq DTBStreptavidin / 0.693
1luq BTNStreptavidin / 0.692
4bj8 BTNAvidin / 0.683
4yvb BTNStreptavidin / 0.682
2uyw BTNAvd protein / 0.680
3wyq BTNStreptavidin / 0.671
2uz2 BTNAvd protein / 0.670
1y52 BTNAvidin-related protein 4/5 / 0.669
1mep BTNStreptavidin / 0.668
2fhl BNIAvidin-related protein 4/5 / 0.667
2fhn BNIAvidin-related protein 4/5 / 0.667
4dne DTBStreptavidin / 0.661
2izi BTNStreptavidin / 0.659
4bcs BTNAvidin-related protein 4/5 / 0.653
1lcz BH7Streptavidin / 0.652
4z28 BTNHoefavidin / 0.651