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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtg BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtg BTNStreptavidin / 1.033
2rtf BTNStreptavidin / 1.029
2izg BTNStreptavidin / 1.028
2rtd BTNStreptavidin / 1.028
2izf BTNStreptavidin / 1.026
2izi BTNStreptavidin / 1.025
3wyq BTNStreptavidin / 1.025
1mk5 BTNStreptavidin / 1.024
3ry2 BTNStreptavidin / 1.023
2y3f BTNStreptavidin / 1.021
2rte BTNStreptavidin / 1.020
2izj BTNStreptavidin / 1.015
2izh BTNStreptavidin / 1.007
1nqm BTNStreptavidin / 0.995
4gda BTNStreptavidin / 0.986
1i9h BNIStreptavidin / 0.982
1swe BTNStreptavidin / 0.979
1n43 BTNStreptavidin / 0.969
3rdo BTNStreptavidin / 0.965
1n9m BTNStreptavidin / 0.962
3wyp BSOStreptavidin / 0.959
1luq BTNStreptavidin / 0.954
1df8 BTNStreptavidin / 0.952
4gd9 BTNStreptavidin / 0.950
4yvb BTNStreptavidin / 0.947
3wzn BTNStreptavidin / 0.945
4dne DTBStreptavidin / 0.942
3rdq DTBStreptavidin / 0.920
1lcw SHMStreptavidin / 0.916
2zsc BTNTamavidin2 / 0.913
4bx7 B4FStreptavidin / 0.912
2rtr IMIStreptavidin / 0.902
1swr BTNStreptavidin / 0.900
1swg BTNStreptavidin / 0.898
1ndj BTNStreptavidin / 0.894
1stp BTNStreptavidin / 0.894
1lcz BH7Streptavidin / 0.885
1swt BTNStreptavidin / 0.885
1rxj BNIStreptavidin / 0.876
2rtp IMIStreptavidin / 0.876
1swp BTNStreptavidin / 0.869
3ew2 BTNHypothetical conserved protein / 0.867
2uyw BTNAvd protein / 0.862
2fhn BNIAvidin-related protein 4/5 / 0.859
2c4i BTNAvidin / 0.855
1mep BTNStreptavidin / 0.854
1rxh BNIStreptavidin / 0.854
4bcs BTNAvidin-related protein 4/5 / 0.851
1y52 BTNAvidin-related protein 4/5 / 0.850
4z28 BTNHoefavidin / 0.849
2fhl BNIAvidin-related protein 4/5 / 0.847
2rtq IMIStreptavidin / 0.845
2rto IMIStreptavidin / 0.843
3t2w BTNAvidin/streptavidin / 0.838
4bj8 BTNAvidin / 0.825
1swp BTQStreptavidin / 0.816
1swn BTNStreptavidin / 0.795
2rtl IMIStreptavidin / 0.773
1swd BTNStreptavidin / 0.771
3vgw NVZAvidin / 0.769
2jgs BTNAvidin / 0.766
2uz2 BTNAvd protein / 0.754
3vhi VHIAvidin / 0.752
2rtn IMIStreptavidin / 0.750
4ggz BTNBll1558 protein / 0.734
1avd BTNAvidin / 0.713
3vhm NPKAvidin / 0.700
3vhh VHHAvidin / 0.690
2rti GLLStreptavidin / 0.680
1ij8 BNIAvidin / 0.677
2rtk GLLStreptavidin / 0.673
2avi BTNAvidin / 0.665