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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rte BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rte BTNStreptavidin / 1.030
2izg BTNStreptavidin / 1.024
2rtg BTNStreptavidin / 1.020
2izj BTNStreptavidin / 1.019
2rtd BTNStreptavidin / 1.019
2rtf BTNStreptavidin / 1.019
2izf BTNStreptavidin / 1.012
2izi BTNStreptavidin / 1.012
2izh BTNStreptavidin / 0.994
3wyq BTNStreptavidin / 0.990
3ry2 BTNStreptavidin / 0.985
2y3f BTNStreptavidin / 0.983
1mk5 BTNStreptavidin / 0.970
4gda BTNStreptavidin / 0.967
1i9h BNIStreptavidin / 0.955
3wyp BSOStreptavidin / 0.955
4dne DTBStreptavidin / 0.949
4gd9 BTNStreptavidin / 0.946
1nqm BTNStreptavidin / 0.942
1swe BTNStreptavidin / 0.935
1lcw SHMStreptavidin / 0.929
1n43 BTNStreptavidin / 0.924
1swn BTNStreptavidin / 0.921
3rdo BTNStreptavidin / 0.921
3wzn BTNStreptavidin / 0.916
1n9m BTNStreptavidin / 0.909
1df8 BTNStreptavidin / 0.897
2zsc BTNTamavidin2 / 0.896
2rtr IMIStreptavidin / 0.892
1luq BTNStreptavidin / 0.890
1swt BTNStreptavidin / 0.890
1y52 BTNAvidin-related protein 4/5 / 0.888
2uyw BTNAvd protein / 0.888
2fhl BNIAvidin-related protein 4/5 / 0.885
2fhn BNIAvidin-related protein 4/5 / 0.882
3rdq DTBStreptavidin / 0.876
1swp BTNStreptavidin / 0.875
4bcs BTNAvidin-related protein 4/5 / 0.875
4yvb BTNStreptavidin / 0.873
1ndj BTNStreptavidin / 0.868
1swg BTNStreptavidin / 0.868
1rxh BNIStreptavidin / 0.862
2rtn IMIStreptavidin / 0.859
3ew2 BTNHypothetical conserved protein / 0.858
1rxj BNIStreptavidin / 0.857
4bx7 B4FStreptavidin / 0.854
2rtq IMIStreptavidin / 0.852
3t2w BTNAvidin/streptavidin / 0.849
2rtp IMIStreptavidin / 0.847
1swr BTNStreptavidin / 0.846
1mep BTNStreptavidin / 0.838
4bj8 BTNAvidin / 0.835
1lcz BH7Streptavidin / 0.832
2c4i BTNAvidin / 0.831
2rtm IMIStreptavidin / 0.825
4z28 BTNHoefavidin / 0.821
2rto IMIStreptavidin / 0.814
1swp BTQStreptavidin / 0.802
3vhi VHIAvidin / 0.790
2jgs BTNAvidin / 0.787
3vgw NVZAvidin / 0.782
2rtl IMIStreptavidin / 0.778
1swd BTNStreptavidin / 0.758
2uz2 BTNAvd protein / 0.757
4ggz BTNBll1558 protein / 0.739
2avi BTNAvidin / 0.716
1stp BTNStreptavidin / 0.713
3vhm NPKAvidin / 0.693
1avd BTNAvidin / 0.683
2rti GLLStreptavidin / 0.678
2rtk GLLStreptavidin / 0.674