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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rl2 UD1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rl2 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.199
2rl1 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.014
3swq EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.961
4r7u UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.948
3upk UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.936
3vcy UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.935
1ryw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.921
3v4t UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.904
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.900
3lth UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.898
3iss EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.870
3kr6 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.831
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.815
1a2n TETUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.762
1uae UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.759
2yvw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.742