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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rir NAP Dipicolinate synthase subunit A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rir NAPDipicolinate synthase subunit A / 1.077
1uxj NADMalate dehydrogenase / 0.670
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.661
1x7d NADPutative ornithine cyclodeaminase / 0.654
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.653
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.651
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.650