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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rh1 CAU Beta-2 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rh1 CAUBeta-2 adrenergic receptor / 1.174
5d6l CAUBeta-2 adrenergic receptor / 1.062
5d5b CAUBeta-2 adrenergic receptor / 1.005
5d5a CAUBeta-2 adrenergic receptor / 0.983
5jqh CAUBeta-2 adrenergic receptor / 0.959
3ny9 JSZBeta-2 adrenergic receptor / 0.928
4amj CVDBeta-1 adrenergic receptor / 0.919
4gbr CAUBeta-2 adrenergic receptor / 0.913
2ycy P32Beta-1 adrenergic receptor / 0.886
2ycz I32Beta-1 adrenergic receptor / 0.849
2ycw CAUBeta-1 adrenergic receptor / 0.827
3nya JTZBeta-2 adrenergic receptor / 0.796
2vt4 P32Beta-1 adrenergic receptor / 0.782
2ycx P32Beta-1 adrenergic receptor / 0.782
4bvn P32Beta-1 adrenergic receptor / 0.763
4lde P0GBeta-2 adrenergic receptor / 0.763
5a8e XTKBeta-1 adrenergic receptor / 0.735
3p0g P0GBeta-2 adrenergic receptor / 0.706
4ami G90Beta-1 adrenergic receptor / 0.694
3ny8 JRZBeta-2 adrenergic receptor / 0.677
3d4s TIMBeta-2 adrenergic receptor / 0.674
4ldl XQCBeta-2 adrenergic receptor / 0.666
4e5f 0N7Polymerase acidic protein / 0.660