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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rf2 MRX Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rf2 MRXGag-Pol polyprotein 2.7.7.49 1.021
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1ikv EFZGag-Pol polyprotein 2.7.7.49 0.731
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.695
3mee T27Gag-Pol polyprotein 2.7.7.49 0.693
2ic3 HBYGag-Pol polyprotein 2.7.7.49 0.671
1tl3 H20Gag-Pol polyprotein 2.7.7.49 0.665
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.658
2opp HBQGag-Pol polyprotein 2.7.7.49 0.656
3bgr T27Gag-Pol polyprotein 2.7.7.49 0.654
1tkt H12Gag-Pol polyprotein 2.7.7.49 0.652
1tkz H16Gag-Pol polyprotein 2.7.7.49 0.650