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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rdn 1PL 1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rdn 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 1.123
2rds 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.870
4isu IKMGlutamate receptor 2 / 0.694
3t7s SAMUncharacterized protein / 0.673
2eg8 FOTDihydroorotase 3.5.2.3 0.667
3fpz AHZThiamine thiazole synthase / 0.664
1nue GDPNucleoside diphosphate kinase B 2.7.4.6 0.660
3kkz SAMUncharacterized protein / 0.656
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.655
5ayz NCNNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.655
2hvd ADPNucleoside diphosphate kinase A 2.7.4.6 0.652
3o5t ADPNitrogen regulatory protein P-II 1 / 0.652