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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r96 FMN NAD(P)H dehydrogenase (quinone)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r96 FMNNAD(P)H dehydrogenase (quinone) / 1.022
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.780
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.751
4r81 FMNPredicted NADH dehydrogenase / 0.707
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.704
3klb FMNUncharacterized protein / 0.704
4j8p FMNFlavodoxin / 0.702
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.698
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.669
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
3f6r FMNFlavodoxin / 0.658
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.653
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650