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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r5q 1UN Gag-Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r5q 1UNGag-Pol polyprotein / 1.328
2pyn 1UNGag-Pol polyprotein 3.4.23.16 1.004
2q64 1UNGag-Pol polyprotein 3.4.23.16 0.962
3el5 1UNGag-Pol polyprotein / 0.941
2pym 1UNGag-Pol polyprotein 3.4.23.16 0.937
3ekx 1UNGag-Pol polyprotein 3.4.23.16 0.901
2bpy 3INGag-Pol polyprotein 3.4.23.16 0.808
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.802
3ekp 478Gag-Pol polyprotein 3.4.23.16 0.772
2f3k RO1Protease / 0.767
3ekq ROCGag-Pol polyprotein 3.4.23.16 0.747
2bpv 1INGag-Pol polyprotein 3.4.23.16 0.735
2bpz 3INGag-Pol polyprotein 3.4.23.16 0.734
3bvb 017Gag-Pol polyprotein 3.4.23.16 0.733
3d1y ROCGag-Pol polyprotein 3.4.23.16 0.729
2nnp ROCProtease / 0.728
2p3a 3TLPol protein / 0.728
3el0 1UNGag-Pol polyprotein 3.4.23.16 0.724
2bpx MK1Gag-Pol polyprotein 3.4.23.16 0.721
1hsg MK1Gag-Pol polyprotein / 0.716
3oxc ROCProtease / 0.716
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.712
3k4v ROCGag-Pol polyprotein 3.4.23.16 0.710
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.710
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.708
1k6v XN2Gag-Pol polyprotein 3.4.23.16 0.707
3d1x ROCGag-Pol polyprotein 3.4.23.16 0.707
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.703
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.703
2pwr G4GGag-Pol polyprotein 3.4.23.16 0.702
1hii C20Gag-Pol polyprotein / 0.701
3ttp 017Gag-Pol polyprotein 3.4.23.16 0.698
1ida 0POGag-Pol polyprotein 3.4.23.47 0.697
2q54 MU1Protease / 0.696
3lix E17Protease / 0.696
1idb 0DOGag-Pol polyprotein / 0.693
2pk5 075Protease / 0.693
1d4i BEGGag-Pol polyprotein 3.4.23.16 0.689
3pwr ROCGag-Pol polyprotein 3.4.23.16 0.689
1k6p XN3Gag-Pol polyprotein 3.4.23.16 0.688
3gga GGWGag-Pol polyprotein / 0.688
1c6z ROCProtease / 0.687
3tof 076Gag-Pol polyprotein 2.7.7.49 0.686
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.683
2fle AIProtease / 0.682
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.678
2nnk ROCProtease / 0.676
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.675
2qnp QN2Gag-Pol polyprotein 3.4.23.16 0.672
3s85 LK0Gag-Pol polyprotein / 0.672
3ufn ROCGag-Pol polyprotein / 0.672
1hsh MK1Gag-Pol polyprotein / 0.671
1hvj A78Gag-Pol polyprotein / 0.671
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.669
2fxd DR7Pol polyprotein / 0.668
1hvk A79Gag-Pol polyprotein / 0.667
3dcr KVSProtease / 0.666
3i2l 2NCProtease / 0.665
1vik BAYGag-Pol polyprotein / 0.664
2p3c 3TLProtease / 0.664
2rkf AB1Pol protein / 0.663
3liq E14Protease / 0.662
1sbg IM1Gag-Pol polyprotein / 0.661
1k6c MK1Gag-Pol polyprotein 3.4.23.16 0.660
2i4u DJRProtease / 0.660
2b60 RITPol polyprotein / 0.659
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.657
2cen 4AHProtease / 0.656
2qi1 MZ4Gag-Pol polyprotein / 0.655
1hpx KNIGag-Pol polyprotein / 0.654
2b7z MK1Gag-Pol polyprotein / 0.654
2z4o 065Gag-Pol polyprotein 3.4.23.16 0.653
3lit E15Protease / 0.653
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.653
3zps EQMGag-Pol polyprotein 3.4.23.16 0.653
3kdb 006Gag-Pol polyprotein 3.4.23.16 0.652
1daz 0Q4Gag-Pol polyprotein 3.4.23.16 0.651
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.651
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.651
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.650