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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r59 PH0 Leukotriene A-4 hydrolase 3.3.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 1.358
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.856
3ebi BEYM1 family aminopeptidase 3.4.11 0.776
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 0.769
3ftx BESLeukotriene A-4 hydrolase 3.3.2.6 0.757
4gaa BESLeukotriene A(4) hydrolase / 0.750
4xmx BESAminopeptidase N 3.4.11.2 0.748
4k5o 1OTM1 family aminopeptidase 3.4.11 0.726
4jbs P52Endoplasmic reticulum aminopeptidase 2 3.4.11 0.709
2dqm BESAminopeptidase N 3.4.11.2 0.707
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.700
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.685
2hpt BESAminopeptidase N 3.4.11.2 0.677
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.669
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.668
3chr 4BSLeukotriene A-4 hydrolase 3.3.2.6 0.667
3fu5 492Leukotriene A-4 hydrolase 3.3.2.6 0.665
4fkk BESAminopeptidase N 3.4.11.2 0.665
3q43 D66M1 family aminopeptidase 3.4.11 0.663
4pu2 PLUAminopeptidase N / 0.658
3t7s SAMUncharacterized protein / 0.652
2qk8 MTXDihydrofolate reductase / 0.651
4typ AP5Adenylate kinase / 0.651
4k5p 1OSM1 family aminopeptidase 3.4.11 0.650