Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r4t ADP Glycogen synthase 2.4.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r4t ADPGlycogen synthase 2.4.1.21 1.069
2r4u ADPGlycogen synthase 2.4.1.21 1.065
2qzs ADPGlycogen synthase 2.4.1.21 1.063
3cx4 ADPGlycogen synthase 2.4.1.21 1.036
3cop ADPGlycogen synthase 2.4.1.21 0.940
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.758
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.707
4f9f GDPPutative glycosyltransferase / 0.702
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.674
3r9i ADPSeptum site-determining protein MinD / 0.661
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.656
2g1m 4HGEgl nine homolog 1 / 0.654