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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r3f SC8 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r3f SC8Cyclin-dependent kinase 2 2.7.11.22 0.873
2c68 CT6Cyclin-dependent kinase 2 2.7.11.22 0.762
2r3i SCFCyclin-dependent kinase 2 2.7.11.22 0.757
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.736
2c69 CT8Cyclin-dependent kinase 2 2.7.11.22 0.729
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.723
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.667
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.663
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.653
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.650