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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qwn ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qwn ADPHeat shock cognate 71 kDa protein / 0.910
1ngb ADPHeat shock cognate 71 kDa protein / 0.847
3fe1 ADPHeat shock 70 kDa protein 6 / 0.841
1ats ADPHeat shock cognate 71 kDa protein / 0.828
2qwl ADPHeat shock cognate 71 kDa protein / 0.824
1ngd ADPHeat shock cognate 71 kDa protein / 0.821
2qwq ADPHeat shock cognate 71 kDa protein / 0.818
1atr ADPHeat shock cognate 71 kDa protein / 0.817
1ngc ADPHeat shock cognate 71 kDa protein / 0.812
3hsc ADPHeat shock cognate 71 kDa protein / 0.805
3ldo ANP78 kDa glucose-regulated protein / 0.804
5f1x ATP78 kDa glucose-regulated protein / 0.803
5f2r ACP78 kDa glucose-regulated protein / 0.803
2qwr ANPHeat shock cognate 71 kDa protein / 0.801
3ldl ATP78 kDa glucose-regulated protein / 0.783
1nge ATPHeat shock cognate 71 kDa protein / 0.781
1ngh ATPHeat shock cognate 71 kDa protein / 0.779
4h5t ADPHeat shock cognate 71 kDa protein / 0.751
1ngj ANPHeat shock cognate 71 kDa protein / 0.722
4b9q ATPChaperone protein DnaK / 0.722
3ule ATPActin-related protein 2 / 0.709
1ngi ANPHeat shock cognate 71 kDa protein / 0.701
1c0f ATPMajor actin / 0.678
4k41 ATPActin, alpha skeletal muscle / 0.675
1t44 ATPActin, alpha skeletal muscle / 0.674
1s22 ATPActin, alpha skeletal muscle / 0.671
4pkg ATPActin, alpha skeletal muscle / 0.668
4b1v ATPActin, alpha skeletal muscle / 0.666
1wua ATPActin, alpha skeletal muscle / 0.665
2v51 ATPActin, alpha skeletal muscle / 0.665
1yxq ATPActin, alpha skeletal muscle / 0.664
2p9k ATPActin-related protein 2 / 0.660
3a5m ATPMajor actin / 0.659
4pl8 ATPActin, alpha skeletal muscle / 0.656
1qz5 ATPActin, alpha skeletal muscle / 0.655