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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qwl ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qwl ADPHeat shock cognate 71 kDa protein / 0.939
1ngd ADPHeat shock cognate 71 kDa protein / 0.902
3hsc ADPHeat shock cognate 71 kDa protein / 0.870
1ngb ADPHeat shock cognate 71 kDa protein / 0.855
1ats ADPHeat shock cognate 71 kDa protein / 0.849
1ngc ADPHeat shock cognate 71 kDa protein / 0.848
3fe1 ADPHeat shock 70 kDa protein 6 / 0.840
5f1x ATP78 kDa glucose-regulated protein / 0.839
3ldo ANP78 kDa glucose-regulated protein / 0.838
1nge ATPHeat shock cognate 71 kDa protein / 0.836
1ngj ANPHeat shock cognate 71 kDa protein / 0.834
1ngh ATPHeat shock cognate 71 kDa protein / 0.831
2qwn ADPHeat shock cognate 71 kDa protein / 0.824
5f2r ACP78 kDa glucose-regulated protein / 0.821
2qwq ADPHeat shock cognate 71 kDa protein / 0.806
3ldl ATP78 kDa glucose-regulated protein / 0.802
1ngi ANPHeat shock cognate 71 kDa protein / 0.800
4h5t ADPHeat shock cognate 71 kDa protein / 0.776
2qwr ANPHeat shock cognate 71 kDa protein / 0.771
1atr ADPHeat shock cognate 71 kDa protein / 0.740
4b9q ATPChaperone protein DnaK / 0.739
1wua ATPActin, alpha skeletal muscle / 0.727
1qz5 ATPActin, alpha skeletal muscle / 0.725
1kxp ATPActin, alpha skeletal muscle / 0.720
3a5m ATPMajor actin / 0.718
1nlv ATPMajor actin / 0.713
3ule ATPActin-related protein 2 / 0.712
2p9k ATPActin-related protein 2 / 0.689
1yxq ATPActin, alpha skeletal muscle / 0.687
4b1v ATPActin, alpha skeletal muscle / 0.678
4k41 ATPActin, alpha skeletal muscle / 0.673
2v51 ATPActin, alpha skeletal muscle / 0.659
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.654
3wt0 ATPCell division protein FtsA / 0.654
2i6a 5I5Adenosine kinase 2.7.1.20 0.651