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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qu6 857 Vascular endothelial growth factor receptor 2 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qu6 857Vascular endothelial growth factor receptor 2 2.7.10.1 1.209
2qu5 276Vascular endothelial growth factor receptor 2 2.7.10.1 0.904
2hz0 GINTyrosine-protein kinase ABL1 2.7.10.2 0.710
2p2i 608Vascular endothelial growth factor receptor 2 2.7.10.1 0.694
3b8q 900Vascular endothelial growth factor receptor 2 2.7.10.1 0.691
3efl 706Vascular endothelial growth factor receptor 2 2.7.10.1 0.690
4ag8 AXIVascular endothelial growth factor receptor 2 2.7.10.1 0.677
3gcs BAXMitogen-activated protein kinase 14 / 0.673
2rl5 2RLVascular endothelial growth factor receptor 2 2.7.10.1 0.652