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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qtr NXX Probable nicotinate-nucleotide adenylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 1.395
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.977
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.976
2h29 DNDProbable nicotinate-nucleotide adenylyltransferase / 0.926
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.836
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.718
5bsf NADPyrroline-5-carboxylate reductase / 0.689
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.669
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.663
4yp7 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.658
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.656
1kqo DNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.655
4j75 TYMTryptophan--tRNA ligase / 0.655
1uxr NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.652