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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qs4 LY5 Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 1.089
3h03 UBPGlutamate receptor 2 / 0.743
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.731
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.728
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.723
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.715
4f31 KAIGlutamate receptor 3 / 0.683
3kfm KAIGlutamate receptor 4 / 0.678
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.677
3h06 VBPGlutamate receptor 2 / 0.664
4xg1 LLPDiaminopimelate decarboxylase / 0.658
3rib SAHN-lysine methyltransferase SMYD2 / 0.657
4i13 FOLDihydrofolate reductase 1.5.1.3 0.656
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.655