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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qs3 UBE Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 1.058
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.946
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.781
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.774
3h03 UBPGlutamate receptor 2 / 0.740
3h06 VBPGlutamate receptor 2 / 0.727
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.701
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.696
4r29 SAMUncharacterized protein / 0.695
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.680
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.674
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.670
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.669
1fw0 KAIGlutamate receptor 2 / 0.660
4f3g KAIGlutamate receptor 3 / 0.658
1toi HCIAspartate aminotransferase 2.6.1.1 0.655
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.654
3hf8 ML0Tryptophan 5-hydroxylase 1 1.14.16.4 0.654
3t0i SAHPutative methyltransferase / 0.654
4ie0 PD2Alpha-ketoglutarate-dependent dioxygenase FTO / 0.654
2d0k FOLDihydrofolate reductase 1.5.1.3 0.653
1toj HCIAspartate aminotransferase 2.6.1.1 0.651
2puh HPK2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase 3.7.1.8 0.650
3sxj SAMPutative methyltransferase / 0.650