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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qs1 UB1 Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 1.115
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.816
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.792
3tza TZGGlutamate receptor 2 / 0.787
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.781
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.723
3h03 UBPGlutamate receptor 2 / 0.707
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.701
3h06 VBPGlutamate receptor 2 / 0.690
4r29 SAMUncharacterized protein / 0.683
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.680
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.677
4xg1 LLPDiaminopimelate decarboxylase / 0.677
4gxs 0YSGlutamate receptor 2 / 0.673
3sxj SAMPutative methyltransferase / 0.670
3kfm KAIGlutamate receptor 4 / 0.658
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.658
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.655
1lbb KAIGlutamate receptor 2 / 0.654
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.653
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.653
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.651
4f31 KAIGlutamate receptor 3 / 0.651
4i1n FOLDihydrofolate reductase 1.5.1.3 0.651