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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qrd ADP 5'-AMP-activated protein kinase subunit gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qrd ADP5'-AMP-activated protein kinase subunit gamma / 1.096
2qr1 ADP5'-AMP-activated protein kinase subunit gamma / 0.723
4kqs IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.680
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.671
4xzj NADPutative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31 0.660
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.658
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.656
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.656
3d8x FADThioredoxin reductase 1 1.8.1.9 0.651