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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qnn QN1 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qnn QN1Gag-Pol polyprotein 3.4.23.16 1.417
2pwr G4GGag-Pol polyprotein 3.4.23.16 1.262
2qnp QN2Gag-Pol polyprotein 3.4.23.16 1.120
3qpj N4IGag-Pol polyprotein 3.4.23.16 1.105
3qro NK9Gag-Pol polyprotein 3.4.23.16 1.086
3qrs NK8Gag-Pol polyprotein 3.4.23.16 1.086
2r38 G4GGag-Pol polyprotein 3.4.23.16 1.061
2r3t G4GGag-Pol polyprotein 3.4.23.16 1.058
2r43 G3GGag-Pol polyprotein 3.4.23.16 1.056
2pwc G3GGag-Pol polyprotein 3.4.23.16 0.998
2pqz G0GGag-Pol polyprotein 3.4.23.16 0.991
3ckt YDPGag-Pol polyprotein 3.4.23.16 0.967
2qnq QN3Gag-Pol polyprotein 3.4.23.16 0.927
3qrm NK7Gag-Pol polyprotein 3.4.23.16 0.910
3qbf JHGGag-Pol polyprotein 3.4.23.16 0.897
3bgb LJGGag-Pol polyprotein 3.4.23.16 0.788
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.767
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.738
4rvj 478Protease / 0.735
1iiq 0ZRGag-Pol polyprotein 3.4.23.16 0.729
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.723
1d4i BEGGag-Pol polyprotein 3.4.23.16 0.715
1b6m PI6Gag-Pol polyprotein 3.4.23.16 0.714
4gb2 0LQGag-Pol polyprotein 2.7.7.49 0.714
2f8g 017Gag-Pol polyprotein 3.4.23.16 0.712
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.707
3qaa G04Gag-Pol polyprotein 3.4.23.16 0.705
2qi5 MZ7Gag-Pol polyprotein / 0.699
1d4j MSCGag-Pol polyprotein 3.4.23.16 0.698
3d20 017Gag-Pol polyprotein 3.4.23.16 0.697
3oxv 478Gag-Pol polyprotein 3.4.23.16 0.695
3s43 478Protease / 0.689
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.685
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.684
3o9e A60Pol polyprotein / 0.684
2i4w KGQProtease / 0.683
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.681
3mws 017Pol protein / 0.680
1ebz BECGag-Pol polyprotein 3.4.23.16 0.679
3nu3 478Gag-Pol polyprotein 3.4.23.16 0.678
1ebw BEIGag-Pol polyprotein 3.4.23.16 0.677
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.670
3qn8 NI7Gag-Pol polyprotein 3.4.23.16 0.669
1t7k BH0Gag-Pol polyprotein 3.4.23.16 0.667
1izh Q50Protease / 0.666
1ivq 0PXGag-Pol polyprotein / 0.665
1b6k PI5Gag-Pol polyprotein 3.4.23.16 0.664
2pym 1UNGag-Pol polyprotein 3.4.23.16 0.664
3nuo 478Gag-Pol polyprotein 3.4.23.16 0.662
4j5j 478Gag-Pol polyprotein 3.4.23.16 0.662
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.661
2i4x KGQProtease / 0.661
1w5y BE6Gag-Pol polyprotein 3.4.23.16 0.660
2qd8 065Gag-Pol polyprotein 3.4.23.16 0.660
3em3 478Gag-Pol polyprotein 3.4.23.16 0.660
3em6 017Gag-Pol polyprotein 3.4.23.16 0.660
3nu6 478Gag-Pol polyprotein 3.4.23.16 0.660
4hdp G52Gag-Pol polyprotein 3.4.23.16 0.659
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.658
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.657
1tcx IM1Gag-Pol polyprotein 3.4.23.16 0.657
2oah QINBeta-secretase 1 3.4.23.46 0.657
1bv7 XV6Gag-Pol polyprotein 3.4.23.16 0.656
3sa7 55AProtease / 0.656
1mer DMQGag-Pol polyprotein 3.4.23.16 0.650