sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.225 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.081 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 1.040 | |
| 4dlz | GNP | GTPase HRas | / | 1.038 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.029 | |
| 4dlx | GNP | GTPase HRas | / | 1.024 | |
| 3lbh | GNP | GTPase HRas | / | 1.020 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.015 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.013 | |
| 4dls | GNP | GTPase HRas | / | 1.006 | |
| 3lbn | GNP | GTPase HRas | / | 1.003 | |
| 3ddc | GNP | GTPase HRas | / | 1.002 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.002 | |
| 4dlv | GNP | GTPase HRas | / | 1.001 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.000 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.999 | |
| 3l8y | GNP | GTPase HRas | / | 0.998 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.997 | |
| 2rgc | GNP | GTPase HRas | / | 0.992 | |
| 2rge | GNP | GTPase HRas | / | 0.991 | |
| 3v4f | GNP | GTPase HRas | / | 0.990 | |
| 5b2z | GNP | GTPase HRas | / | 0.990 | |
| 3k9l | GNP | GTPase HRas | / | 0.987 | |
| 3oiv | GNP | GTPase HRas | / | 0.987 | |
| 3i3s | GNP | GTPase HRas | / | 0.985 | |
| 3k8y | GNP | GTPase HRas | / | 0.985 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.984 | |
| 2c5l | GTP | GTPase HRas | / | 0.984 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.983 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.981 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.981 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.980 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.980 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.978 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.975 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.971 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.970 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.970 | |
| 4dso | GSP | GTPase KRas | / | 0.970 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.969 | |
| 3oiu | GNP | GTPase HRas | / | 0.967 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.966 | |
| 3rs0 | GNP | GTPase HRas | / | 0.965 | |
| 4l9w | GNP | GTPase HRas | / | 0.964 | |
| 4dlt | GNP | GTPase HRas | / | 0.962 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.961 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.961 | |
| 4g0n | GNP | GTPase HRas | / | 0.959 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.959 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.958 | |
| 4k81 | GTP | GTPase HRas | / | 0.957 | |
| 4xvq | GNP | GTPase HRas | / | 0.955 | |
| 3rs4 | GNP | GTPase HRas | / | 0.954 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.951 | |
| 3lbi | GNP | GTPase HRas | / | 0.951 | |
| 4dlw | GNP | GTPase HRas | / | 0.951 | |
| 4dsn | GCP | GTPase KRas | / | 0.951 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.950 | |
| 3oiw | GNP | GTPase HRas | / | 0.949 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.949 | |
| 2rgg | GNP | GTPase HRas | / | 0.948 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.948 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.947 | |
| 3rsl | GNP | GTPase HRas | / | 0.947 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.947 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.946 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.946 | |
| 2rgb | GNP | GTPase HRas | / | 0.944 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.944 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.943 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.939 | |
| 3rs5 | GNP | GTPase HRas | / | 0.936 | |
| 3rs7 | GNP | GTPase HRas | / | 0.936 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.936 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.934 | |
| 3tgp | GNP | GTPase HRas | / | 0.934 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.932 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.931 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.930 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.930 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.927 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.925 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.921 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.919 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.919 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.918 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.913 | |
| 4nyi | GNP | GTPase HRas | / | 0.911 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.911 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.910 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.906 | |
| 3r9x | GNP | GTPase Era | / | 0.906 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.905 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.904 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.904 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.901 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.901 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.899 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.898 | |
| 1lfd | GNP | GTPase HRas | / | 0.898 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.896 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.895 | |
| 4nyj | GNP | GTPase HRas | / | 0.894 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.893 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.891 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.890 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.888 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.885 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.885 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.884 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.884 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.884 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.883 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.883 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.878 | |
| 4epx | GDP | GTPase KRas | / | 0.876 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.875 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.875 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.869 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.867 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.867 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.867 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.867 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.863 | |
| 4mit | GTP | Rho-related protein racC | / | 0.863 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.860 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.860 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.859 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.858 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.855 | |
| 3ref | GDP | Rho family GTPase | / | 0.855 | |
| 4xvr | GNP | GTPase HRas | / | 0.855 | |
| 3kud | GDP | GTPase HRas | / | 0.854 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.853 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.853 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.853 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.853 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.849 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.849 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.847 | |
| 2ce2 | GDP | GTPase HRas | / | 0.843 | |
| 4q03 | GDP | GTPase KRas | / | 0.843 | |
| 3ftq | GNP | Septin-2 | / | 0.842 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.841 | |
| 4tq9 | GDP | GTPase KRas | / | 0.841 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.840 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.839 | |
| 4dsu | GDP | GTPase KRas | / | 0.839 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.839 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.838 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.838 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.837 | |
| 4wa7 | GDP | GTPase KRas | / | 0.835 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.828 | |
| 4q02 | GDP | GTPase KRas | / | 0.826 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.824 | |
| 4dvg | GSP | Rho family GTPase | / | 0.823 | |
| 4ldj | GDP | GTPase KRas | / | 0.823 | |
| 4ql3 | GDP | GTPase KRas | / | 0.823 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.822 | |
| 4epw | GDP | GTPase KRas | / | 0.822 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.821 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.819 | |
| 2cl6 | CAG | GTPase HRas | / | 0.816 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.816 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.816 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.815 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.814 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.813 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.811 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.810 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.810 | |
| 4lv6 | GDP | GTPase KRas | / | 0.810 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.810 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.806 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.806 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.805 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.804 | |
| 4l9s | GDP | GTPase HRas | / | 0.804 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.803 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.801 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.801 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.801 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.801 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.800 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.799 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.798 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.796 | |
| 4luc | GDP | GTPase KRas | / | 0.794 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.793 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.793 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.793 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.792 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.792 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.792 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.792 | |
| 4l8g | GDP | GTPase KRas | / | 0.792 | |
| 4lpk | GDP | GTPase KRas | / | 0.792 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.791 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.791 | |
| 4xvu | ATP | ATPase GET3 | / | 0.791 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.789 | |
| 4lrw | GDP | GTPase KRas | / | 0.789 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.787 | |
| 4obe | GDP | GTPase KRas | / | 0.787 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.787 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.786 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.786 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.786 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.786 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.785 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.784 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.784 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.783 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.782 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.780 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.779 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.778 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.777 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.776 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.776 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.775 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.773 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.768 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.767 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.766 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.764 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.764 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.764 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.763 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.763 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.762 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.762 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.761 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.761 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.758 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.758 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.757 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.757 | |
| 1ank | ANP | Adenylate kinase | / | 0.756 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.756 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.755 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.755 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.755 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.755 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.752 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.752 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.751 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.749 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.747 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.746 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.744 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.743 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.743 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.743 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.742 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.741 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.739 | |
| 4v02 | ATP | Site-determining protein | / | 0.739 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.738 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.738 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.736 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.735 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.734 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.734 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.733 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.733 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.733 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.732 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.732 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.732 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.732 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.731 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.731 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.731 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.731 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.731 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.730 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.729 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.728 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.727 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.727 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.726 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.721 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.721 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.721 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.720 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.717 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.717 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.716 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.714 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.714 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.714 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.713 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.712 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.712 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.711 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.709 | |
| 2fna | ADP | Uncharacterized protein | / | 0.709 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.709 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.709 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.709 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.708 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.708 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.707 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.707 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.707 | |
| 4yqf | GDP | Septin-9 | / | 0.707 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.706 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.705 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.705 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 5ftc | ADP | TPR domain protein | / | 0.704 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 1xmv | ADP | Protein RecA | / | 0.702 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.702 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.701 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.701 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.701 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.699 | |
| 5cyo | GDP | Septin-9 | / | 0.698 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.697 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.692 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.691 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.691 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.690 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.690 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.688 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.688 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.686 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.686 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.685 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.685 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 3ieu | GDP | GTPase Era | / | 0.684 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.684 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.684 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.683 | |
| 2ad5 | ADP | CTP synthase | / | 0.683 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.683 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.683 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.683 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.682 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.681 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.681 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.681 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.681 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.681 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.680 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.680 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.680 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.679 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.679 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 4db1 | ANP | Myosin-7 | / | 0.679 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.678 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.677 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.676 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.674 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.674 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.673 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.672 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.672 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.672 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.672 | |
| 1nly | AGS | Cag alpha | / | 0.670 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.670 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.670 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.670 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.670 | |
| 5bn3 | ADP | NEQ263 | / | 0.670 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.669 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.668 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.668 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.668 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.668 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.668 | |
| 4jld | ADP | Adenylate kinase | / | 0.667 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.664 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.664 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.663 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.663 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.663 | |
| 4jlo | ADP | Adenylate kinase | / | 0.663 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.663 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.662 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.662 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.661 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.661 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.661 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.658 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.658 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.657 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.656 | |
| 4jky | ADP | Adenylate kinase | / | 0.655 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.654 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.653 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.653 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.652 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.652 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.652 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.651 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.650 |