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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qbu SAH Precorrin-2 methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qbu SAHPrecorrin-2 methyltransferase / 1.123
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.897
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.897
1v9a SAHUncharacterized protein / 0.823
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.822
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.810
2ybo SAHMethyltransferase / 0.804
2npn SAMPutative cobalamin synthesis related protein / 0.801
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.799
3nut SAHPrecorrin-3 methylase / 0.798
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.766
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.736
2egl SAHDiphthine synthase / 0.704
2eld SAHDiphthine synthase / 0.701
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.699
2dek SAHDiphthine synthase / 0.699
2dsh SAHDiphthine synthase / 0.699
2e15 SAHDiphthine synthase / 0.696
2huq SAHDiphthine synthase / 0.696
2e8h SAHDiphthine synthase / 0.694
2hux SAHDiphthine synthase / 0.694
2e16 SAHDiphthine synthase / 0.691
2hut SAHDiphthine synthase / 0.691
2owg SAHDiphthine synthase / 0.690
2owu SAHDiphthine synthase / 0.689
2el3 SAHDiphthine synthase / 0.688
2dxv SAHDiphthine synthase / 0.687
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.687
2e7r SAHDiphthine synthase / 0.682
2ehl SAHDiphthine synthase / 0.681
2eka SAHDiphthine synthase / 0.680
2e07 SAHDiphthine synthase / 0.679
2ek2 SAHDiphthine synthase / 0.677
2eh2 SAHDiphthine synthase / 0.676
2owv SAHDiphthine synthase / 0.676
2el0 SAHDiphthine synthase / 0.675
2z6r SAHDiphthine synthase / 0.674
1wng SAHDiphthine synthase / 0.673
2emu SAHDiphthine synthase / 0.673
3ab8 ATPUncharacterized protein / 0.673
2dsg SAHDiphthine synthase / 0.671
2ed5 SAHDiphthine synthase / 0.671
2huv SAHDiphthine synthase / 0.671
2p9d SAHDiphthine synthase / 0.671
2ek3 SAHDiphthine synthase / 0.669
1vce SAHDiphthine synthase / 0.668
4r8h SP1cAMP-activated global transcriptional regulator CRP / 0.667
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.666
2ha8 SAHProbable methyltransferase TARBP1 / 0.665
2ejz SAHDiphthine synthase / 0.664
2ele SAHDiphthine synthase / 0.664
2p2x SAHDiphthine synthase / 0.664
2p5c SAHDiphthine synthase / 0.664
2owk SAHDiphthine synthase / 0.660
2dxx SAHDiphthine synthase / 0.657
2egb SAHDiphthine synthase / 0.657
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.657
2dxw SAHDiphthine synthase / 0.656
2e08 SAHDiphthine synthase / 0.656
2e17 SAHDiphthine synthase / 0.656
2ejk SAHDiphthine synthase / 0.656
4cng SAHSpoU rRNA methylase / 0.656
2e8s SAHDiphthine synthase / 0.655
2hr8 SAHDiphthine synthase / 0.653
2p6l SAHDiphthine synthase / 0.653
4jal SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.653
2dv4 SAHDiphthine synthase / 0.652
2egs SAHDiphthine synthase / 0.651