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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q9f C3S Cholesterol 24-hydroxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2q9f C3SCholesterol 24-hydroxylase / 1.241
2aa6 STRMineralocorticoid receptor / 0.695
4boe CLRJapanin / 0.692
2aa5 STRMineralocorticoid receptor / 0.665
1zhw HC2Oxysterol-binding protein homolog 4 / 0.663
1lri CLRBeta-elicitin cryptogein / 0.660
4j26 ESTEstrogen receptor beta / 0.656
2g5o DRQEstrogen receptor / 0.652