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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q7o IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.794
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.697
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.696
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.691
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.686
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.685
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.683
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.680
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.676
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.665
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.656
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.655
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.652