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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q4b NAP Uncharacterized protein At5g02240

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q4b NAPUncharacterized protein At5g02240 / 1.329
1ybm NAPUncharacterized protein At5g02240 / 0.924
1xq6 NAPUncharacterized protein At5g02240 / 0.881
2q46 NAPUncharacterized protein At5g02240 / 0.767
1hdo NAPFlavin reductase (NADPH) / 0.729
1dhr NADDihydropteridine reductase 1.5.1.34 0.698
2bfo NDPPteridine reductase 1 1.5.1.33 0.695
4clo NAPPteridine reductase / 0.680
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.672
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.656
3e8x NAPBH1520 protein / 0.655
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.653