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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q3r FMN 12-oxophytodienoate reductase 1 1.3.1.42

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 1.101
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.920
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.916
1h63 FMNPentaerythritol tetranitrate reductase / 0.905
3p8i FMNPentaerythritol tetranitrate reductase / 0.903
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.902
1h51 FMNPentaerythritol tetranitrate reductase / 0.901
1vyr FMNPentaerythritol tetranitrate reductase / 0.901
3p67 FMNPentaerythritol tetranitrate reductase / 0.901
4jic FMNGTN Reductase / 0.895
1h50 FMNPentaerythritol tetranitrate reductase / 0.891
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.886
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.885
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.885
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.883
3aty FMNProstaglandin F2a synthase / 0.870
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.870
1gwj FMNMorphinone reductase / 0.863
3p8j FMNPentaerythritol tetranitrate reductase / 0.863
3atz FMNProstaglandin F2a synthase / 0.862
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.855
3p74 FMNPentaerythritol tetranitrate reductase / 0.854
4tmc FMNOld yellow enzyme / 0.854
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.849
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.846
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.844
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.837
4e2d FMNDehydrogenase / 0.836
4e2b FMNDehydrogenase / 0.822
4tmb FMNOld yellow enzyme / 0.821
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.816
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.815
3gka FMNN-ethylmaleimide reductase / 0.803
3l67 FMNXenobiotic reductase / 0.802
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.800
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.799
3f03 FMNPentaerythritol tetranitrate reductase / 0.798
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.797
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.794
3p84 FMNPentaerythritol tetranitrate reductase / 0.792
1z44 FMNNADPH dehydrogenase / 0.791
4qai FMNNADPH dehydrogenase / 0.789
1z41 FMNNADPH dehydrogenase / 0.786
2h8x FMNXenA / 0.786
4utm FNRXenobiotic reductase / 0.783
5cpm FNRNADH:flavin oxidoreductase / 0.783
3n19 FNRXenobiotic reductase / 0.782
4utl FNRXenobiotic reductase / 0.782
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.781
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.779
1vhn FMNtRNA-dihydrouridine synthase / 0.779
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.777
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.777
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.775
3l5l FMNXenobiotic reductase / 0.774
4uth FMNXenobiotic reductase / 0.774
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.768
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.763
3n14 FMNXenobiotic reductase / 0.749
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.746
2j6x FMNLactate oxidase / 0.722
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.719
3p62 FMNPentaerythritol tetranitrate reductase / 0.719
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.711
4rje FNRLactate oxidase / 0.708
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.707
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.701
4yco FMNtRNA-dihydrouridine(16) synthase / 0.700
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.696
2gjl FMNNitronate monooxygenase 1.13.12.16 0.696
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.684
2pg0 FADAcyl-CoA dehydrogenase / 0.682
4cw5 FMNDfnA / 0.681
5ebu FMNLactate oxidase / 0.680
2e77 FMNLactate oxidase / 0.677
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.674
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.673
3esz FMNFlavodoxin / 0.672
3w77 FMNFMN-dependent NADH-azoreductase / 0.670
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.669
3klb FMNUncharacterized protein / 0.669
2b3d FADModulator of drug activity B / 0.668
5jsc FADPutative acyl-CoA dehydrogenase / 0.668
1x0p FADTll0078 protein / 0.667
4l82 FMNUncharacterized protein / 0.666
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.666
4j8p FMNFlavodoxin / 0.665
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.665
1p4m FMNRiboflavin kinase 2.7.1.26 0.664
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.664
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.663
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.663
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.661
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.660
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.660
2pr5 FMNBlue-light photoreceptor / 0.660
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.660
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
5i39 FADL-amino acid deaminase / 0.660
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.659
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.659
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.658
2z6d FMNPhototropin-2 2.7.11.1 0.657
3gr8 FMNNADPH dehydrogenase / 0.657
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
4kuk RBFPutative blue-light photoreceptor / 0.656
1nb9 RBFRiboflavin kinase 2.7.1.26 0.655
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.655
2hfo FMNActivator of photopigment and puc expression / 0.655
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.653
4f07 FADStyrene monooxygenase component 2 / 0.653
4hh0 FMNAppA protein / 0.652
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.651
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.650
2fre FMNNAD(P)H-flavin oxidoreductase / 0.650
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.650