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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q3k MUW Gag-Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q3k MUWGag-Pol polyprotein / 1.295
1b6k PI5Gag-Pol polyprotein 3.4.23.16 0.684
1z1r HBHGag-Pol polyprotein 3.4.23.16 0.682
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.681
3oxw 017Gag-Pol polyprotein 3.4.23.16 0.677
1ody LP1Gag-Pol polyprotein 3.4.23.16 0.671
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.668
3kfn 3TLGag-Pol polyprotein / 0.668
3em6 017Gag-Pol polyprotein 3.4.23.16 0.666
1pro A88Gag-Pol polyprotein / 0.664
3s85 LK0Gag-Pol polyprotein / 0.660
1hiv 1ZKGag-Pol polyprotein / 0.658
1b6m PI6Gag-Pol polyprotein 3.4.23.16 0.657
3bxr DRRGag-Pol polyprotein 3.4.23.16 0.653