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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q0g UPU Poly(A) polymerase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q0g UPUPoly(A) polymerase, putative / 0.916
3hiy UTPUncharacterized protein / 0.683
2ikf UTPPoly(A) polymerase, putative / 0.679
2q0f UTPPoly(A) polymerase, putative / 0.675
5a30 AGSMitochondrial poly(A) polymerase / 0.664
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.661
2b51 UTPRNA editing complex protein MP57 / 0.655
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652