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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q0c CTP Poly(A) polymerase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q0c CTPPoly(A) polymerase, putative / 1.039
2q0f UTPPoly(A) polymerase, putative / 0.863
2b51 UTPRNA editing complex protein MP57 / 0.830
2b56 UTPRNA editing complex protein MP57 / 0.807
2q0d ATPPoly(A) polymerase, putative / 0.772
3hiy UTPUncharacterized protein / 0.754
4fh5 UTPTerminal uridylyltransferase cid1 / 0.722
2nom DUTPoly(A) polymerase, putative / 0.708
2q66 ATPPoly(A) polymerase 2.7.7.19 0.708
1r89 CTPCCA-adding enzyme 2.7.7.72 0.698
4xj3 GTPCyclic GMP-AMP synthase / 0.695
2ikf UTPPoly(A) polymerase, putative / 0.688
4xj4 3ATCyclic GMP-AMP synthase / 0.687
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.682
3g6x DGTDNA polymerase iota 2.7.7.7 0.680
4fhp UTPTerminal uridylyltransferase cid1 / 0.677
4k97 ATPCyclic GMP-AMP synthase / 0.676
4bec ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.672
1r8b ATPCCA-adding enzyme 2.7.7.72 0.671
4khy TTPDNA-directed DNA polymerase / 0.664
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.655
3q23 G2PVirion DNA-directed RNA polymerase / 0.652
1esn ANPPantothenate kinase 2.7.1.33 0.651