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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ptf FMN Uncharacterized protein MTH_863

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ptf FMNUncharacterized protein MTH_863 / 1.124
2nr4 FMNConserved protein / 0.874
2iml FMNUncharacterized protein / 0.797
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.767
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.751
2bf4 FADNADPH--cytochrome P450 reductase / 0.743
3crz FADFerredoxin--NADP+ reductase / 0.741
2vnj FADNADPH:ferredoxin reductase / 0.735
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.734
3qfr FADNADPH--cytochrome P450 reductase / 0.733
3qe2 FADNADPH--cytochrome P450 reductase / 0.732
1amo FADNADPH--cytochrome P450 reductase / 0.731
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.730
3qfc FADNADPH--cytochrome P450 reductase / 0.730
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.729
3bnk FMNFlavoredoxin / 0.729
4yau FADNADPH--cytochrome P450 reductase / 0.729
1que FADFerredoxin--NADP reductase 1.18.1.2 0.728
2vnh FADNADPH:ferredoxin reductase / 0.727
1gaq FADFerredoxin / 0.726
1usc FMNMonooxygenase / 0.726
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.726
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.725
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.725
2pia FMNPhthalate dioxygenase reductase / 0.725
3ojw FADNADPH--cytochrome P450 reductase / 0.725
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.724
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.724
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.723
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.722
3e4v FMNUncharacterized protein / 0.721
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.721
2bn4 FADNADPH--cytochrome P450 reductase / 0.720
4y9u FADNADPH--cytochrome P450 reductase / 0.719
4y7c FADNADPH--cytochrome P450 reductase / 0.718
1gaw FADFerredoxin / 0.716
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.714
3qfs FADNADPH--cytochrome P450 reductase / 0.714
1a8p FADFerredoxin--NADP reductase / 0.713
1pkv RBFRiboflavin synthase 2.5.1.9 0.712
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.712
2qdx FADFerredoxin--NADP+ reductase / 0.710
2bgi FADNADPH:ferredoxin reductase / 0.709
3qft FADNADPH--cytochrome P450 reductase / 0.708
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.706
3fpk FADFerredoxin-NADP reductase / 0.703
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.702
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.702
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.702
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.701
2bgj FADNADPH:ferredoxin reductase / 0.700
3a3b RBFLumazine protein / 0.699
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.698
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.695
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.695
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.693
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.692
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.691
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.691
4k1x FADNADPH:ferredoxin reductase / 0.690
4f07 FADStyrene monooxygenase component 2 / 0.689
1ja0 FADNADPH--cytochrome P450 reductase / 0.686
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.685
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.683
4yaf FADNADPH--cytochrome P450 reductase / 0.683
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.682
3r5y F42Uncharacterized protein / 0.682
1ja1 FADNADPH--cytochrome P450 reductase / 0.680
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.679
3w5u FADFerredoxin / 0.679
4y9r FADNADPH--cytochrome P450 reductase / 0.679
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.678
4eer FMNPhototropin-2 2.7.11.1 0.677
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.676
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.676
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.676
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.674
2dji FADPyruvate oxidase / 0.673
3pl8 FADPyranose 2-oxidase / 0.672
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.672
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.671
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.671
1j9z FADNADPH--cytochrome P450 reductase / 0.668
1wlk FMNFMN-binding protein / 0.667
3a6r FMNFMN-binding protein / 0.666
3a6q FMNFMN-binding protein / 0.665
3vy2 FMNFMN-binding protein / 0.665
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.664
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.662
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.661
2pd7 FADVivid PAS protein VVD / 0.660
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.660
1v5e FADPyruvate oxidase / 0.658
1eje FMNProtein MTH_152 / 0.656
3a20 FMNFMN-binding protein / 0.655
4eep FMNPhototropin-2 2.7.11.1 0.653
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.653
4i6g FADCryptochrome-2 / 0.653
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.653
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
4mih FADPyranose 2-oxidase 1.1.3.10 0.651
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.650
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.650