sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2psw | COA | N-alpha-acetyltransferase 50 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 1.321 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.971 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.885 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.880 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.836 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.806 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.798 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.793 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.791 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.787 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.776 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.770 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.768 | |
| 4cry | ACO | PanD regulatory factor | / | 0.766 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.766 | |
| 4crz | ACO | PanD regulatory factor | / | 0.764 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.760 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.758 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.751 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.738 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.733 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.728 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.728 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.727 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.725 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.723 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.720 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.720 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.720 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.717 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.715 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.709 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.706 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.706 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.701 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.701 | |
| 1pu9 | COA | HAT A1 | / | 0.699 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.696 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.695 | |
| 4kub | COA | Uncharacterized protein | / | 0.693 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.692 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.692 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.689 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.686 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.686 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.684 | |
| 3bj8 | COA | Diamine acetyltransferase 1 | / | 0.684 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.683 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.680 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.679 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.679 | |
| 2jev | NHQ | Diamine acetyltransferase 1 | / | 0.678 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.677 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.677 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.676 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.676 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.676 | |
| 5c88 | COA | N-alpha-acetyltransferase | / | 0.674 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.673 | |
| 3s6f | COA | Uncharacterized protein | / | 0.671 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.669 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.667 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.667 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.665 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.664 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.664 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.664 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.663 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.662 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.662 | |
| 4h6z | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.662 | |
| 2wpw | ACO | Orf14 | / | 0.660 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.660 | |
| 1pua | COA | HAT A1 | / | 0.658 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.656 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.655 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.655 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.653 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.653 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.651 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.651 |