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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pkn ACP Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pkn ACPAdenosine kinase 2.7.1.20 0.854
4o1g AGSAdenosine kinase 2.7.1.20 0.741
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.712
5c41 ACPRibokinase / 0.683
5c3y AN2Ribokinase / 0.680
4xf7 ACPCarbohydrate/pyrimidine kinase, PfkB family / 0.677
4xf6 ADPCarbohydrate/pyrimidine kinase, PfkB family / 0.675
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.670
5c3z ACPRibokinase / 0.665
5c40 ACPRibokinase / 0.650