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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pja 33Z Carboxypeptidase B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pja 33ZCarboxypeptidase B / 1.445
2pj4 414Carboxypeptidase B / 1.144
4a39 GEMUncharacterized protein / 0.748
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.682
2jib ADPOxalyl-CoA decarboxylase 4.1.1.8 0.672
2p1o NLAProtein TRANSPORT INHIBITOR RESPONSE 1 / 0.663
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.662
3b05 IPEIsopentenyl-diphosphate delta-isomerase / 0.657
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.653
2ixk TDOdTDP-4-dehydrorhamnose 3,5-epimerase 5.1.3.13 0.651
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.650