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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pbw DOQ Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 1.121
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.933
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.931
1fw0 KAIGlutamate receptor 2 / 0.913
3kfm KAIGlutamate receptor 4 / 0.898
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.896
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.883
4f3g KAIGlutamate receptor 3 / 0.879
4f31 KAIGlutamate receptor 3 / 0.857
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.854
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.784
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.761
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.724
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.715
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.709
4gxs 0YSGlutamate receptor 2 / 0.690
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.682
3h06 VBPGlutamate receptor 2 / 0.663
5bp9 SAHPutative methyltransferase protein / 0.662
1nbh SAMGlycine N-methyltransferase 2.1.1.20 0.661
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.653
3kkz SAMUncharacterized protein / 0.652
2yqz SAMUncharacterized protein / 0.650