Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pb4 SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pb4 SAHDiphthine synthase / 1.139
2pb6 SAHDiphthine synthase / 1.116
2e8r SAHDiphthine synthase / 1.111
2dv5 SAHDiphthine synthase / 1.094
2p6l SAHDiphthine synthase / 1.093
2pb5 SAHDiphthine synthase / 1.093
2pcg SAHDiphthine synthase / 1.090
2p6d SAHDiphthine synthase / 1.079
2p6k SAHDiphthine synthase / 1.078
2dv4 SAHDiphthine synthase / 1.077
2ejk SAHDiphthine synthase / 1.077
2emu SAHDiphthine synthase / 1.077
2dsi SAHDiphthine synthase / 1.076
2eh5 SAHDiphthine synthase / 1.076
2el3 SAHDiphthine synthase / 1.076
2ek4 SAHDiphthine synthase / 1.075
2pch SAHDiphthine synthase / 1.075
2e8s SAHDiphthine synthase / 1.074
2ek7 SAHDiphthine synthase / 1.074
2en5 SAHDiphthine synthase / 1.074
2eh4 SAHDiphthine synthase / 1.073
2eld SAHDiphthine synthase / 1.073
2emr SAHDiphthine synthase / 1.073
2pck SAHDiphthine synthase / 1.073
2ed5 SAHDiphthine synthase / 1.072
2eka SAHDiphthine synthase / 1.072
2dv3 SAHDiphthine synthase / 1.071
2pca SAHDiphthine synthase / 1.071
2dxx SAHDiphthine synthase / 1.070
2p5f SAHDiphthine synthase / 1.061
2e16 SAHDiphthine synthase / 1.058
2eni SAHDiphthine synthase / 1.058
2p5c SAHDiphthine synthase / 1.058
2e08 SAHDiphthine synthase / 1.057
2e17 SAHDiphthine synthase / 1.056
2e4n SAHDiphthine synthase / 1.056
2eeq SAHDiphthine synthase / 1.056
2owg SAHDiphthine synthase / 1.056
1vce SAHDiphthine synthase / 1.055
2owk SAHDiphthine synthase / 1.055
2dsg SAHDiphthine synthase / 1.053
2e15 SAHDiphthine synthase / 1.053
2dsh SAHDiphthine synthase / 1.052
2egs SAHDiphthine synthase / 1.052
2el0 SAHDiphthine synthase / 1.051
2ek2 SAHDiphthine synthase / 1.048
2p9d SAHDiphthine synthase / 1.044
2ek3 SAHDiphthine synthase / 1.040
2ele SAHDiphthine synthase / 1.040
2pcm SAHDiphthine synthase / 1.040
2e8q SAHDiphthine synthase / 1.038
2dxw SAHDiphthine synthase / 1.037
2egl SAHDiphthine synthase / 1.036
2dv7 SAHDiphthine synthase / 1.034
2dxv SAHDiphthine synthase / 1.034
2e07 SAHDiphthine synthase / 1.034
2e7r SAHDiphthine synthase / 1.034
2egb SAHDiphthine synthase / 1.034
2ehl SAHDiphthine synthase / 1.033
2p6i SAHDiphthine synthase / 1.024
2e8h SAHDiphthine synthase / 1.018
1wng SAHDiphthine synthase / 1.017
2huq SAHDiphthine synthase / 1.012
2eh2 SAHDiphthine synthase / 1.007
2z6r SAHDiphthine synthase / 1.003
2dek SAHDiphthine synthase / 0.994
2huv SAHDiphthine synthase / 0.992
2owu SAHDiphthine synthase / 0.991
2ejj SAHDiphthine synthase / 0.986
2pci SAHDiphthine synthase / 0.983
2owv SAHDiphthine synthase / 0.979
2p2x SAHDiphthine synthase / 0.946
2hux SAHDiphthine synthase / 0.934
2hut SAHDiphthine synthase / 0.927
2ejz SAHDiphthine synthase / 0.895
2hr8 SAHDiphthine synthase / 0.866
2owf SAHDiphthine synthase / 0.798
3nut SAHPrecorrin-3 methylase / 0.671
2pml ANPUncharacterized protein / 0.666
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.665
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.664
2ed3 SAHDiphthine synthase / 0.663
1id0 ANPSensor protein PhoQ 2.7.13.3 0.660
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.660
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.659
2p0a ANPSynapsin-3 / 0.658
1mjh ATPUniversal stress protein MJ0577 / 0.657
4x3l MTARNA 2'-O ribose methyltransferase / 0.656
3dzd ADPTranscriptional regulator (NtrC family) / 0.655