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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p6d SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2p6d SAHDiphthine synthase / 1.135
2e8r SAHDiphthine synthase / 1.109
2eh5 SAHDiphthine synthase / 1.105
2p6k SAHDiphthine synthase / 1.105
2emr SAHDiphthine synthase / 1.103
2pb6 SAHDiphthine synthase / 1.099
2pb5 SAHDiphthine synthase / 1.097
2p6l SAHDiphthine synthase / 1.095
2p9d SAHDiphthine synthase / 1.092
2en5 SAHDiphthine synthase / 1.091
2eni SAHDiphthine synthase / 1.089
2pck SAHDiphthine synthase / 1.089
2eh4 SAHDiphthine synthase / 1.088
2p5f SAHDiphthine synthase / 1.088
2pcg SAHDiphthine synthase / 1.088
2dv3 SAHDiphthine synthase / 1.087
2ek4 SAHDiphthine synthase / 1.087
2eka SAHDiphthine synthase / 1.086
2ele SAHDiphthine synthase / 1.084
2el3 SAHDiphthine synthase / 1.080
2pb4 SAHDiphthine synthase / 1.079
2dv5 SAHDiphthine synthase / 1.078
2p5c SAHDiphthine synthase / 1.076
2eeq SAHDiphthine synthase / 1.075
2dxx SAHDiphthine synthase / 1.073
2e4n SAHDiphthine synthase / 1.073
2e8s SAHDiphthine synthase / 1.073
2ed5 SAHDiphthine synthase / 1.073
2eld SAHDiphthine synthase / 1.073
2ek7 SAHDiphthine synthase / 1.072
2owk SAHDiphthine synthase / 1.072
2p6i SAHDiphthine synthase / 1.072
2pcm SAHDiphthine synthase / 1.072
2e17 SAHDiphthine synthase / 1.071
2pca SAHDiphthine synthase / 1.070
2dxw SAHDiphthine synthase / 1.069
2ek3 SAHDiphthine synthase / 1.069
2owg SAHDiphthine synthase / 1.069
1wng SAHDiphthine synthase / 1.065
2egs SAHDiphthine synthase / 1.065
2huv SAHDiphthine synthase / 1.065
2el0 SAHDiphthine synthase / 1.064
2e08 SAHDiphthine synthase / 1.058
2e16 SAHDiphthine synthase / 1.057
2dsh SAHDiphthine synthase / 1.054
2dsg SAHDiphthine synthase / 1.053
2e15 SAHDiphthine synthase / 1.053
2e8q SAHDiphthine synthase / 1.053
2e8h SAHDiphthine synthase / 1.052
2ek2 SAHDiphthine synthase / 1.052
2dxv SAHDiphthine synthase / 1.051
2e07 SAHDiphthine synthase / 1.051
2e7r SAHDiphthine synthase / 1.051
2ehl SAHDiphthine synthase / 1.051
2dek SAHDiphthine synthase / 1.048
2ejk SAHDiphthine synthase / 1.047
2z6r SAHDiphthine synthase / 1.047
2egb SAHDiphthine synthase / 1.046
2dsi SAHDiphthine synthase / 1.044
2emu SAHDiphthine synthase / 1.044
2pch SAHDiphthine synthase / 1.040
2egl SAHDiphthine synthase / 1.036
2eh2 SAHDiphthine synthase / 1.036
1vce SAHDiphthine synthase / 1.035
2ejj SAHDiphthine synthase / 1.035
2huq SAHDiphthine synthase / 1.031
2dv4 SAHDiphthine synthase / 1.026
2dv7 SAHDiphthine synthase / 1.020
2owv SAHDiphthine synthase / 1.017
2pci SAHDiphthine synthase / 1.011
2owu SAHDiphthine synthase / 1.010
2hut SAHDiphthine synthase / 0.997
2p2x SAHDiphthine synthase / 0.984
2hux SAHDiphthine synthase / 0.948
2hr8 SAHDiphthine synthase / 0.836
2ejz SAHDiphthine synthase / 0.804
2owf SAHDiphthine synthase / 0.778
2ed3 SAHDiphthine synthase / 0.721
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.691
2ha8 SAHProbable methyltransferase TARBP1 / 0.690
3s3t ATPUniversal stress protein / 0.676
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.665
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.664
2npn SAMPutative cobalamin synthesis related protein / 0.663
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 0.663
4ypa SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.663
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.662
1s16 ANPDNA topoisomerase 4 subunit B / 0.661
3dzd ADPTranscriptional regulator (NtrC family) / 0.660
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.659
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.658
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.658
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.653
2pml ANPUncharacterized protein / 0.652
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.651
1mjh ATPUniversal stress protein MJ0577 / 0.650
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.650