Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p41 SAH Genome polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2p41 SAHGenome polyprotein / 0.831
4ctj SAMGenome polyprotein / 0.776
3emd SFGMethyltransferase / 0.774
3p8z SAHGenome polyprotein 2.1.1.56 0.773
2px5 SAHGenome polyprotein 2.7.7.48 0.772
3elu SAMMethyltransferase / 0.772
3eld SFGMethyltransferase / 0.770
4ctk SAMGenome polyprotein / 0.770
1l9k SAHGenome polyprotein 2.7.7.48 0.761
1r6a SAHGenome polyprotein 2.7.7.48 0.760
5jjr SAHGenome polyprotein / 0.757
2wa2 SAMGenome polyprotein / 0.756
3p97 SAMGenome polyprotein 2.1.1.56 0.754
3evc SAHGenome polyprotein 2.1.1.56 0.750
3evb SAHGenome polyprotein 2.1.1.56 0.747
3eva SAHGenome polyprotein 2.1.1.56 0.744
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.738
2p3q SAHGenome polyprotein / 0.735
2pxa SAHGenome polyprotein 2.7.7.48 0.735
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.731
2px2 SAHGenome polyprotein 2.7.7.48 0.727
3ely SAHMethyltransferase / 0.723
4k6m SAHGenome polyprotein / 0.723
3tos SAHCalS11 / 0.721
5dto SAHGenome polyprotein / 0.720
4gf5 SAHCalS11 / 0.713
2p1d SAHGenome polyprotein 2.7.7.48 0.711
3evg SAHGenome polyprotein 2.1.1.56 0.710
5jjs SAHGenome polyprotein / 0.708
3lkz SFGGenome polyprotein / 0.707
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.704
3p8z 36AGenome polyprotein 2.1.1.56 0.702
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.692
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.686
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.683
2xbm SAHGenome polyprotein / 0.681
4xvy SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.672
2g1p SAHDNA adenine methylase 2.1.1.72 0.671
4x7y SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.670
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.669
2yvl SAMtRNA (adenine(58)-N(1))-methyltransferase TrmI / 0.666
1yf3 SAHDNA adenine methylase / 0.665
5k7u SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.663
3c3y SAHO-methyltransferase / 0.659
1skm SAHModification methylase HhaI 2.1.1.37 0.653
2oxt SAMGenome polyprotein / 0.653