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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p1d SAH Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2p1d SAHGenome polyprotein 2.7.7.48 0.798
1r6a SAHGenome polyprotein 2.7.7.48 0.747
2p3q SAHGenome polyprotein / 0.732
3ely SAHMethyltransferase / 0.731
3evg SAHGenome polyprotein 2.1.1.56 0.723
1l9k SAHGenome polyprotein 2.7.7.48 0.721
2pxa SAHGenome polyprotein 2.7.7.48 0.714
2px2 SAHGenome polyprotein 2.7.7.48 0.713
3eva SAHGenome polyprotein 2.1.1.56 0.712
2p41 SAHGenome polyprotein / 0.711
3emd SFGMethyltransferase / 0.711
3evc SAHGenome polyprotein 2.1.1.56 0.711
3eld SFGMethyltransferase / 0.709
4ctk SAMGenome polyprotein / 0.709
2px5 SAHGenome polyprotein 2.7.7.48 0.706
3p8z SAHGenome polyprotein 2.1.1.56 0.703
4k6m SAHGenome polyprotein / 0.698
4ctj SAMGenome polyprotein / 0.697
5jjr SAHGenome polyprotein / 0.697
3evb SAHGenome polyprotein 2.1.1.56 0.696
5dto SAHGenome polyprotein / 0.691
3elu SAMMethyltransferase / 0.685
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.685
3p97 SAMGenome polyprotein 2.1.1.56 0.682
2wa2 SAMGenome polyprotein / 0.680
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.677
3lkz SFGGenome polyprotein / 0.676
3p8z 36AGenome polyprotein 2.1.1.56 0.665
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.663
2oy0 SAHGenome polyprotein / 0.661
5jjs SAHGenome polyprotein / 0.658
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.653
3c3y SAHO-methyltransferase / 0.653