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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oz0 FMN Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 1.130
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.874
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.869
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.860
2nli FMNLactate oxidase / 0.839
2j6x FMNLactate oxidase / 0.778
2zfa FMNLactate oxidase / 0.762
4yl2 FMNLactate oxidase / 0.749
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.723
5ebu FMNLactate oxidase / 0.718
3p74 FMNPentaerythritol tetranitrate reductase / 0.698
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.695
3l5l FMNXenobiotic reductase / 0.681
4qai FMNNADPH dehydrogenase / 0.679
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.671
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.666
1h51 FMNPentaerythritol tetranitrate reductase / 0.662
2gr3 FADFerredoxin reductase / 0.661
3p82 FMNPentaerythritol tetranitrate reductase / 0.661
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.660
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
3p84 FMNPentaerythritol tetranitrate reductase / 0.658
2gqw FADFerredoxin reductase / 0.656
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.652
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.650
3n14 FMNXenobiotic reductase / 0.650