Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oyl IDC Endoglycoceramidase II

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oyl IDCEndoglycoceramidase II / 1.103
2j7d GI1Beta-glucosidase A 3.2.1.21 0.727
2wbg LGSBeta-glucosidase A 3.2.1.21 0.720
3lcv SAM16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.674
1yf3 SAHDNA adenine methylase / 0.666
4iif CTSBeta-glucosidase 1 3.2.1.21 0.660
2pd8 FADVivid PAS protein VVD / 0.655