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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oyf IAC Basic phospholipase A2 VRV-PL-VIIIa 3.1.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oyf IACBasic phospholipase A2 VRV-PL-VIIIa 3.1.1.4 0.853
1jje BYSBeta-lactamase / 0.672
1onp FOM1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.668
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
3o7w SAMLeucine carboxyl methyltransferase 1 2.1.1.233 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
4dsj DGTDNA polymerase I / 0.654
4z17 PEPEnolase / 0.651