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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oy2 ILE_ALA_GLY Neutrophil collagenase 3.4.24.34

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oy2 ILE_ALA_GLYNeutrophil collagenase 3.4.24.34 0.920
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.699
3lik EEGMacrophage metalloelastase 3.4.24.65 0.698
3lil EEAMacrophage metalloelastase 3.4.24.65 0.694
2oxw ILE_ALA_GLYMacrophage metalloelastase 3.4.24.65 0.693
1mnc PLHNeutrophil collagenase 3.4.24.34 0.688
1hv5 RXPStromelysin-3 3.4.24 0.687
1sln INHStromelysin-1 3.4.24.17 0.677
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.657
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.650