Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oxt SAM Genome polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oxt SAMGenome polyprotein / 0.895
1r6a SAHGenome polyprotein 2.7.7.48 0.666
4y9d NAIC alpha-dehydrogenase / 0.656
2p41 SAHGenome polyprotein / 0.653
3evg SAHGenome polyprotein 2.1.1.56 0.651
3fri SAH16S rRNA methylase / 0.650
3p8z SAHGenome polyprotein 2.1.1.56 0.650