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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owv SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2owv SAHDiphthine synthase / 1.105
1wng SAHDiphthine synthase / 1.077
2e08 SAHDiphthine synthase / 1.074
2emr SAHDiphthine synthase / 1.070
2pca SAHDiphthine synthase / 1.068
2eh4 SAHDiphthine synthase / 1.066
2en5 SAHDiphthine synthase / 1.066
2egs SAHDiphthine synthase / 1.060
2dv5 SAHDiphthine synthase / 1.059
2owu SAHDiphthine synthase / 1.059
2p5f SAHDiphthine synthase / 1.059
2el3 SAHDiphthine synthase / 1.058
2owg SAHDiphthine synthase / 1.058
2p2x SAHDiphthine synthase / 1.058
2dxv SAHDiphthine synthase / 1.057
2eeq SAHDiphthine synthase / 1.056
2ed5 SAHDiphthine synthase / 1.055
2dv3 SAHDiphthine synthase / 1.054
2e7r SAHDiphthine synthase / 1.053
2eh5 SAHDiphthine synthase / 1.053
2ehl SAHDiphthine synthase / 1.053
2pb5 SAHDiphthine synthase / 1.053
2dxx SAHDiphthine synthase / 1.052
2e8r SAHDiphthine synthase / 1.052
2pcg SAHDiphthine synthase / 1.052
2eka SAHDiphthine synthase / 1.049
2huv SAHDiphthine synthase / 1.047
2hut SAHDiphthine synthase / 1.044
2e8q SAHDiphthine synthase / 1.041
2owk SAHDiphthine synthase / 1.040
2dek SAHDiphthine synthase / 1.039
2egb SAHDiphthine synthase / 1.038
2e07 SAHDiphthine synthase / 1.037
2dxw SAHDiphthine synthase / 1.036
2ek3 SAHDiphthine synthase / 1.036
2p9d SAHDiphthine synthase / 1.036
2pcm SAHDiphthine synthase / 1.036
2dsg SAHDiphthine synthase / 1.035
2e15 SAHDiphthine synthase / 1.035
2ek4 SAHDiphthine synthase / 1.035
2eld SAHDiphthine synthase / 1.035
2huq SAHDiphthine synthase / 1.035
2ek7 SAHDiphthine synthase / 1.034
1vce SAHDiphthine synthase / 1.033
2e4n SAHDiphthine synthase / 1.032
2p6i SAHDiphthine synthase / 1.028
2ek2 SAHDiphthine synthase / 1.026
2e8s SAHDiphthine synthase / 1.024
2dsi SAHDiphthine synthase / 1.023
2e17 SAHDiphthine synthase / 1.023
2e8h SAHDiphthine synthase / 1.023
2el0 SAHDiphthine synthase / 1.023
2dsh SAHDiphthine synthase / 1.022
2p6k SAHDiphthine synthase / 1.022
2pb6 SAHDiphthine synthase / 1.020
2dv7 SAHDiphthine synthase / 1.018
2eni SAHDiphthine synthase / 1.018
2z6r SAHDiphthine synthase / 1.018
2p6d SAHDiphthine synthase / 1.017
2ele SAHDiphthine synthase / 1.016
2e16 SAHDiphthine synthase / 1.011
2eh2 SAHDiphthine synthase / 1.007
2pch SAHDiphthine synthase / 1.006
2ejk SAHDiphthine synthase / 1.003
2p5c SAHDiphthine synthase / 0.999
2ejj SAHDiphthine synthase / 0.994
2egl SAHDiphthine synthase / 0.991
2emu SAHDiphthine synthase / 0.987
2p6l SAHDiphthine synthase / 0.986
2dv4 SAHDiphthine synthase / 0.985
2pck SAHDiphthine synthase / 0.983
2hux SAHDiphthine synthase / 0.979
2pb4 SAHDiphthine synthase / 0.979
2hr8 SAHDiphthine synthase / 0.963
2pci SAHDiphthine synthase / 0.960
2ejz SAHDiphthine synthase / 0.857
2owf SAHDiphthine synthase / 0.815
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.713
2ed3 SAHDiphthine synthase / 0.701
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.695
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.689
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.683
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.683
2qbu SAHPrecorrin-2 methyltransferase / 0.676
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.671
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.669
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.659
2ha8 SAHProbable methyltransferase TARBP1 / 0.658
1id0 ANPSensor protein PhoQ 2.7.13.3 0.657
1j21 ATPArgininosuccinate synthase / 0.656
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.654
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652