Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owk SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2owk SAHDiphthine synthase / 1.108
2e17 SAHDiphthine synthase / 1.098
2dxw SAHDiphthine synthase / 1.097
2e08 SAHDiphthine synthase / 1.089
2ek7 SAHDiphthine synthase / 1.084
2p9d SAHDiphthine synthase / 1.084
2dxx SAHDiphthine synthase / 1.083
2eni SAHDiphthine synthase / 1.083
2p6i SAHDiphthine synthase / 1.083
2p6k SAHDiphthine synthase / 1.083
2p6l SAHDiphthine synthase / 1.083
2ehl SAHDiphthine synthase / 1.082
2pcm SAHDiphthine synthase / 1.082
2e4n SAHDiphthine synthase / 1.081
2owu SAHDiphthine synthase / 1.081
2dv5 SAHDiphthine synthase / 1.080
2pb5 SAHDiphthine synthase / 1.080
2dv3 SAHDiphthine synthase / 1.079
2ele SAHDiphthine synthase / 1.079
2e8r SAHDiphthine synthase / 1.078
2egb SAHDiphthine synthase / 1.078
2egl SAHDiphthine synthase / 1.078
2eh5 SAHDiphthine synthase / 1.078
2el3 SAHDiphthine synthase / 1.078
2z6r SAHDiphthine synthase / 1.077
2e8s SAHDiphthine synthase / 1.076
2en5 SAHDiphthine synthase / 1.076
2pb6 SAHDiphthine synthase / 1.076
2pck SAHDiphthine synthase / 1.076
2eh4 SAHDiphthine synthase / 1.075
2ek4 SAHDiphthine synthase / 1.075
2emr SAHDiphthine synthase / 1.075
2pcg SAHDiphthine synthase / 1.075
2eka SAHDiphthine synthase / 1.074
2p6d SAHDiphthine synthase / 1.072
2ejj SAHDiphthine synthase / 1.069
2e16 SAHDiphthine synthase / 1.068
2dsg SAHDiphthine synthase / 1.065
2dsh SAHDiphthine synthase / 1.065
2dv7 SAHDiphthine synthase / 1.065
2dxv SAHDiphthine synthase / 1.065
2e07 SAHDiphthine synthase / 1.065
2e7r SAHDiphthine synthase / 1.065
2dek SAHDiphthine synthase / 1.064
2egs SAHDiphthine synthase / 1.063
2eh2 SAHDiphthine synthase / 1.063
2ek3 SAHDiphthine synthase / 1.063
2e15 SAHDiphthine synthase / 1.062
2dv4 SAHDiphthine synthase / 1.061
2eeq SAHDiphthine synthase / 1.061
2emu SAHDiphthine synthase / 1.061
2p5f SAHDiphthine synthase / 1.061
2ejk SAHDiphthine synthase / 1.060
2ed5 SAHDiphthine synthase / 1.059
2el0 SAHDiphthine synthase / 1.058
2owg SAHDiphthine synthase / 1.058
2pca SAHDiphthine synthase / 1.057
1wng SAHDiphthine synthase / 1.056
2ek2 SAHDiphthine synthase / 1.055
2eld SAHDiphthine synthase / 1.055
2pb4 SAHDiphthine synthase / 1.055
2huq SAHDiphthine synthase / 1.054
2huv SAHDiphthine synthase / 1.054
2pci SAHDiphthine synthase / 1.052
2e8q SAHDiphthine synthase / 1.049
2hut SAHDiphthine synthase / 1.044
2pch SAHDiphthine synthase / 1.041
2e8h SAHDiphthine synthase / 1.040
2owv SAHDiphthine synthase / 1.040
1vce SAHDiphthine synthase / 1.037
2p5c SAHDiphthine synthase / 1.037
2p2x SAHDiphthine synthase / 1.031
2dsi SAHDiphthine synthase / 1.027
2hux SAHDiphthine synthase / 0.936
2hr8 SAHDiphthine synthase / 0.894
2ejz SAHDiphthine synthase / 0.767
2owf SAHDiphthine synthase / 0.729
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.715
2ed3 SAHDiphthine synthase / 0.705
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.703
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.693
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.689
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.687
3s3t ATPUniversal stress protein / 0.682
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.679
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.678
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.677
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.673
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.666
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.663
2qbu SAHPrecorrin-2 methyltransferase / 0.660
1kor ANPArgininosuccinate synthase / 0.658
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.658
4jl8 ADPAdenylate kinase / 0.653
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.652
1mbz IOTCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.650
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.650