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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owg SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2owg SAHDiphthine synthase / 1.106
2pcg SAHDiphthine synthase / 1.093
2pb5 SAHDiphthine synthase / 1.092
2e8r SAHDiphthine synthase / 1.091
2eh5 SAHDiphthine synthase / 1.091
2el3 SAHDiphthine synthase / 1.090
2eh4 SAHDiphthine synthase / 1.089
2en5 SAHDiphthine synthase / 1.089
2pb6 SAHDiphthine synthase / 1.089
2ek4 SAHDiphthine synthase / 1.088
2emr SAHDiphthine synthase / 1.088
2eka SAHDiphthine synthase / 1.087
2e8h SAHDiphthine synthase / 1.082
2huq SAHDiphthine synthase / 1.077
2p6l SAHDiphthine synthase / 1.075
2dv5 SAHDiphthine synthase / 1.074
2ek7 SAHDiphthine synthase / 1.074
2eld SAHDiphthine synthase / 1.074
2dv3 SAHDiphthine synthase / 1.073
2p5f SAHDiphthine synthase / 1.073
2p9d SAHDiphthine synthase / 1.073
2pcm SAHDiphthine synthase / 1.073
2e8s SAHDiphthine synthase / 1.072
2p6k SAHDiphthine synthase / 1.071
2pca SAHDiphthine synthase / 1.071
2pch SAHDiphthine synthase / 1.071
2pck SAHDiphthine synthase / 1.071
2e4n SAHDiphthine synthase / 1.070
2dxx SAHDiphthine synthase / 1.069
2ed5 SAHDiphthine synthase / 1.069
2ek2 SAHDiphthine synthase / 1.069
2ele SAHDiphthine synthase / 1.069
2p6d SAHDiphthine synthase / 1.069
1vce SAHDiphthine synthase / 1.059
2e08 SAHDiphthine synthase / 1.058
2owk SAHDiphthine synthase / 1.058
2owv SAHDiphthine synthase / 1.058
1wng SAHDiphthine synthase / 1.057
2huv SAHDiphthine synthase / 1.057
2dv4 SAHDiphthine synthase / 1.056
2egs SAHDiphthine synthase / 1.056
2p6i SAHDiphthine synthase / 1.056
2pb4 SAHDiphthine synthase / 1.056
2eeq SAHDiphthine synthase / 1.055
2dxw SAHDiphthine synthase / 1.054
2el0 SAHDiphthine synthase / 1.054
2e17 SAHDiphthine synthase / 1.053
2ejk SAHDiphthine synthase / 1.052
2eh2 SAHDiphthine synthase / 1.051
2emu SAHDiphthine synthase / 1.051
2p5c SAHDiphthine synthase / 1.049
2dek SAHDiphthine synthase / 1.043
2e8q SAHDiphthine synthase / 1.042
2owu SAHDiphthine synthase / 1.042
2ejj SAHDiphthine synthase / 1.040
2ek3 SAHDiphthine synthase / 1.040
2dsi SAHDiphthine synthase / 1.039
2e16 SAHDiphthine synthase / 1.038
2hut SAHDiphthine synthase / 1.038
2dxv SAHDiphthine synthase / 1.037
2e7r SAHDiphthine synthase / 1.037
2egb SAHDiphthine synthase / 1.037
2z6r SAHDiphthine synthase / 1.037
2e07 SAHDiphthine synthase / 1.036
2egl SAHDiphthine synthase / 1.036
2ehl SAHDiphthine synthase / 1.036
2dsg SAHDiphthine synthase / 1.035
2dsh SAHDiphthine synthase / 1.034
2e15 SAHDiphthine synthase / 1.034
2p2x SAHDiphthine synthase / 1.034
2eni SAHDiphthine synthase / 1.026
2dv7 SAHDiphthine synthase / 1.019
2pci SAHDiphthine synthase / 1.016
2hux SAHDiphthine synthase / 0.979
2hr8 SAHDiphthine synthase / 0.922
2owf SAHDiphthine synthase / 0.823
2ejz SAHDiphthine synthase / 0.748
2ed3 SAHDiphthine synthase / 0.726
2qbu SAHPrecorrin-2 methyltransferase / 0.690
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.683
2ybo SAHMethyltransferase / 0.683
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.678
1j21 ATPArgininosuccinate synthase / 0.676
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.674
3s3t ATPUniversal stress protein / 0.672
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.670
1id0 ANPSensor protein PhoQ 2.7.13.3 0.658
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.656
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.653
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.653
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.653
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.650