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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owf SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2owf SAHDiphthine synthase / 1.040
1vce SAHDiphthine synthase / 0.861
2owg SAHDiphthine synthase / 0.823
2owv SAHDiphthine synthase / 0.815
2dsi SAHDiphthine synthase / 0.811
2ejz SAHDiphthine synthase / 0.801
2e16 SAHDiphthine synthase / 0.799
2pb4 SAHDiphthine synthase / 0.798
2p2x SAHDiphthine synthase / 0.793
2e8h SAHDiphthine synthase / 0.788
2el3 SAHDiphthine synthase / 0.787
2dv5 SAHDiphthine synthase / 0.786
1wng SAHDiphthine synthase / 0.785
2ejk SAHDiphthine synthase / 0.783
2p5c SAHDiphthine synthase / 0.780
2egs SAHDiphthine synthase / 0.778
2eld SAHDiphthine synthase / 0.778
2p6d SAHDiphthine synthase / 0.778
2huv SAHDiphthine synthase / 0.775
2dv3 SAHDiphthine synthase / 0.772
2dv7 SAHDiphthine synthase / 0.772
2huq SAHDiphthine synthase / 0.769
2dsg SAHDiphthine synthase / 0.768
2hr8 SAHDiphthine synthase / 0.764
2pb6 SAHDiphthine synthase / 0.763
2ed5 SAHDiphthine synthase / 0.760
2ejj SAHDiphthine synthase / 0.760
2eh5 SAHDiphthine synthase / 0.759
2dek SAHDiphthine synthase / 0.758
2e8r SAHDiphthine synthase / 0.758
2eni SAHDiphthine synthase / 0.757
2dxv SAHDiphthine synthase / 0.756
2dsh SAHDiphthine synthase / 0.753
2e08 SAHDiphthine synthase / 0.753
2dv4 SAHDiphthine synthase / 0.752
2hux SAHDiphthine synthase / 0.751
2pca SAHDiphthine synthase / 0.751
2pcg SAHDiphthine synthase / 0.751
2emu SAHDiphthine synthase / 0.750
2p5f SAHDiphthine synthase / 0.750
2pcm SAHDiphthine synthase / 0.749
2owu SAHDiphthine synthase / 0.748
2hut SAHDiphthine synthase / 0.747
2eeq SAHDiphthine synthase / 0.745
2en5 SAHDiphthine synthase / 0.745
2pb5 SAHDiphthine synthase / 0.744
2p9d SAHDiphthine synthase / 0.743
2eka SAHDiphthine synthase / 0.740
2emr SAHDiphthine synthase / 0.740
2p6l SAHDiphthine synthase / 0.738
2e07 SAHDiphthine synthase / 0.737
2e7r SAHDiphthine synthase / 0.736
2ek2 SAHDiphthine synthase / 0.736
2dxw SAHDiphthine synthase / 0.735
2p6k SAHDiphthine synthase / 0.733
2e8q SAHDiphthine synthase / 0.731
2ek4 SAHDiphthine synthase / 0.731
2e8s SAHDiphthine synthase / 0.730
2pch SAHDiphthine synthase / 0.730
2pck SAHDiphthine synthase / 0.730
2owk SAHDiphthine synthase / 0.729
2e4n SAHDiphthine synthase / 0.722
2ele SAHDiphthine synthase / 0.721
2eh4 SAHDiphthine synthase / 0.720
2ek3 SAHDiphthine synthase / 0.720
2pci SAHDiphthine synthase / 0.720
2egl SAHDiphthine synthase / 0.716
2p6i SAHDiphthine synthase / 0.716
2el0 SAHDiphthine synthase / 0.711
2dxx SAHDiphthine synthase / 0.709
2ek7 SAHDiphthine synthase / 0.709
2e15 SAHDiphthine synthase / 0.708
2e17 SAHDiphthine synthase / 0.708
2eh2 SAHDiphthine synthase / 0.697
2z6r SAHDiphthine synthase / 0.697
2egb SAHDiphthine synthase / 0.696
2ehl SAHDiphthine synthase / 0.696
2ed3 SAHDiphthine synthase / 0.691
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.657
2npn SAMPutative cobalamin synthesis related protein / 0.651