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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ow0 6MR Matrix metalloproteinase-9 3.4.24.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ow0 6MRMatrix metalloproteinase-9 3.4.24.35 0.928
1bzs BSINeutrophil collagenase 3.4.24.34 0.722
1hy7 MBSStromelysin-1 3.4.24.17 0.693
4h76 10BMacrophage metalloelastase 3.4.24.65 0.683
3kry 3KRCollagenase 3 3.4.24 0.682
1zs0 EINNeutrophil collagenase 3.4.24.34 0.673
4h1q 0XXMatrix metalloproteinase-9 3.4.24.35 0.670
4ayk CGSInterstitial collagenase 3.4.24.7 0.666
1zvx FINNeutrophil collagenase 3.4.24.34 0.662
3ayk CGSInterstitial collagenase 3.4.24.7 0.653
3elm 24FCollagenase 3 3.4.24 0.652
3o2x 3O2Collagenase 3 3.4.24 0.652